ct scan
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- Information Technology > Sensing and Signal Processing > Image Processing (1.00)
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Lung250M-4B: A Combined 3D Dataset for CT- and Point Cloud-Based Intra-Patient Lung Registration
A popular benchmark for intra-patient lung registration is provided by the DIR-LAB COPDgene dataset consisting of large-motion in-and expiratory breath-hold CT pairs. This dataset alone, however, does not provide enough samples to properly train state-of-the-art deep learning methods. Other public datasets often also provide only small sample sizes or include primarily small motions between scans that do not translate well to larger deformations. For point-based geometric registration, the PVT1010 dataset provides a large number of vessel point clouds without any correspondences and a labeled test set corresponding to the COPDgene cases. However, the absence of correspondences for supervision complicates training, and a fair comparison with image-based algorithms is infeasible, since CT scans for the training data are not publicly available.We here provide a combined benchmark for image-and point-based registration approaches. We curated a total of 248 public multi-centric in-and expiratory lung CT scans from 124 patients, which show large motion between scans, processed them to ensure sufficient homogeneity between the data and generated vessel point clouds that are well distributed even deeper inside the lungs. For supervised training, we provide vein and artery segmentations of the vessels and multiple thousand image-derived keypoint correspondences for each pair. For validation, we provide multiple scan pairs with manual landmark annotations. Finally, as first baselines on our new benchmark, we evaluate several image and point cloud registration methods on the dataset.
Touchstone Benchmark: Are We on the Right Way for Evaluating AI Algorithms for Medical Segmentation?
How can we test AI performance? This question seems trivial, but it isn't. Standard benchmarks often have problems such as in-distribution and small-size test sets, oversimplified metrics, unfair comparisons, and short-term outcome pressure. As a consequence, good performance on standard benchmarks does not guarantee success in real-world scenarios. To address these problems, we present Touchstone, a large-scale collaborative segmentation benchmark of 9 types of abdominal organs.
3D Path Planning for Robot-assisted Vertebroplasty from Arbitrary Bi-plane X-ray via Differentiable Rendering
Inigo, Blanca, Killeen, Benjamin D., Choi, Rebecca, Song, Michelle, Uneri, Ali, Khan, Majid, Bailey, Christopher, Krieger, Axel, Unberath, Mathias
Robotic systems are transforming image-guided interventions by enhancing accuracy and minimizing radiation exposure. A significant challenge in robotic assistance lies in surgical path planning, which often relies on the registration of intraoperative 2D images with preoperative 3D CT scans. This requirement can be burdensome and costly, particularly in procedures like vertebroplasty, where preoperative CT scans are not routinely performed. To address this issue, we introduce a differentiable rendering-based framework for 3D transpedicular path planning utilizing bi-planar 2D X-rays. Our method integrates differentiable rendering with a vertebral atlas generated through a Statistical Shape Model (SSM) and employs a learned similarity loss to refine the SSM shape and pose dynamically, independent of fixed imaging geometries. We evaluated our framework in two stages: first, through vertebral reconstruction from orthogonal X-rays for benchmarking, and second, via clinician-in-the-loop path planning using arbitrary-view X-rays. Our results indicate that our method outperformed a normalized cross-correlation baseline in reconstruction metrics (DICE: 0.75 vs. 0.65) and achieved comparable performance to the state-of-the-art model ReVerteR (DICE: 0.77), while maintaining generalization to arbitrary views. Success rates for bipedicular planning reached 82% with synthetic data and 75% with cadaver data, exceeding the 66% and 31% rates of a 2D-to-3D baseline, respectively. In conclusion, our framework facilitates versatile, CT-free 3D path planning for robot-assisted vertebroplasty, effectively accommodating real-world imaging diversity without the need for preoperative CT scans.
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- Health & Medicine > Surgery (1.00)
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PCS Workflow for Veridical Data Science in the Age of AI
Rewolinski, Zachary T., Yu, Bin
Data science is a pillar of artificial intelligence (AI), which is transforming nearly every domain of human activity, from the social and physical sciences to engineering and medicine. While data-driven findings in AI offer unprecedented power to extract insights and guide decision-making, many are difficult or impossible to replicate. A key reason for this challenge is the uncertainty introduced by the many choices made throughout the data science life cycle (DSLC). Traditional statistical frameworks often fail to account for this uncertainty. The Predictability-Computability-Stability (PCS) framework for veridical (truthful) data science offers a principled approach to addressing this challenge throughout the DSLC. This paper presents an updated and streamlined PCS workflow, tailored for practitioners and enhanced with guided use of generative AI. We include a running example to display the PCS framework in action, and conduct a related case study which showcases the uncertainty in downstream predictions caused by judgment calls in the data cleaning stage.
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Imaging-Based Mortality Prediction in Patients with Systemic Sclerosis
Peltekian, Alec K., Senkow, Karolina, Durak, Gorkem, Grudzinski, Kevin M., Bemiss, Bradford C., Dematte, Jane E., Richardson, Carrie, Markov, Nikolay S., Carns, Mary, Aren, Kathleen, Soriano, Alexandra, Dapas, Matthew, Perlman, Harris, Gundersheimer, Aaron, Selvan, Kavitha C., Varga, John, Hinchcliff, Monique, Warrior, Krishnan, Gao, Catherine A., Wunderink, Richard G., Budinger, GR Scott, Choudhary, Alok N., Esposito, Anthony J., Misharin, Alexander V., Agrawal, Ankit, Bagci, Ulas
Interstitial lung disease (ILD) is a leading cause of morbidity and mortality in systemic sclerosis (SSc). Chest computed tomography (CT) is the primary imaging modality for diagnosing and monitoring lung complications in SSc patients. However, its role in disease progression and mortality prediction has not yet been fully clarified. This study introduces a novel, large-scale longitudinal chest CT analysis framework that utilizes radiomics and deep learning to predict mortality associated with lung complications of SSc. We collected and analyzed 2,125 CT scans from SSc patients enrolled in the Northwestern Scleroderma Registry, conducting mortality analyses at one, three, and five years using advanced imaging analysis techniques. Death labels were assigned based on recorded deaths over the one-, three-, and five-year intervals, confirmed by expert physicians. In our dataset, 181, 326, and 428 of the 2,125 CT scans were from patients who died within one, three, and five years, respectively. Using ResNet-18, DenseNet-121, and Swin Transformer we use pre-trained models, and fine-tuned on 2,125 images of SSc patients. Models achieved an AUC of 0.769, 0.801, 0.709 for predicting mortality within one-, three-, and five-years, respectively. Our findings highlight the potential of both radiomics and deep learning computational methods to improve early detection and risk assessment of SSc-related interstitial lung disease, marking a significant advancement in the literature.
- North America > United States > Michigan > Washtenaw County > Ann Arbor (0.14)
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Appendix
In this part, we provide detailed descriptions of previous abdominal organ segmentation datasets. The introductions of multi-organs Datasets will be developed in Sec. Annotations from the existing datasets are used if available. Acquisition details are different for each institution since they follow different clinical protocols in the clinical scenario. Images were reconstructed at the 2.5-5 mm section thickness with a standard FC08 convolutional kernel and a 400-500 mm reconstruction diameter.
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- Asia > Middle East > Republic of Türkiye > İzmir Province > İzmir (0.04)
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